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llm-wiki-manager
Build, maintain, and query a personal LLM-managed wiki — a markdown knowledge base where the LLM owns all writing, cross-referencing, and bookkeeping while the user curates sources. Use this skill when the user wants to (1) bootstrap a new wiki, second brain, or research notebook; (2) ingest a new source (article, PDF, paper, transcript) and update relevant entity/concept pages, the index, and log; (3) query an existing wiki and synthesize an answer with citations, filing it back if useful; (4) update the wiki when a new source supersedes a claim across multiple pages (diff-before-write sweep); (5) lint the wiki for orphan pages, broken links, index drift, or stub pages — auto-dated reports. Trigger this when the user mentions a "second brain", "research wiki", "knowledge base", or "Memex", or asks Claude to track sources across sessions. Bundles four idempotent scripts and enforces the bookkeeping discipline that makes wikis compound rather than rot.
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// RATINGS
// README
LLM Wiki Manager
A Claude Code skill for building and maintaining a personal LLM-managed wiki — a persistent, compounding knowledge base where the LLM does all the writing, cross-referencing, and bookkeeping while you curate sources and ask questions.
🇹🇷 Türkçe için README.tr.md
Quick Start
git clone https://github.com/sametbrr/llm-wiki-manager ~/.claude/skills/llm-wiki-manager
Start a new Claude Code session in your research folder:
mkdir ~/research/my-topic && cd ~/research/my-topic && claude
> "Set up an LLM wiki here. Topic: history of nutrition science."
Features
Instead of RAG — where the LLM rediscovers answers from raw documents on every query — this pattern has the LLM compile raw sources into a persistent, interlinked markdown wiki. Each new source enriches existing pages. Cross-references are built eagerly. Contradictions are flagged. Knowledge compounds over time.
Implements Karpathy's LLM Wiki pattern as a full Claude Code skill with 8 operating modes (including multi-wiki routing), 5 idempotent Python scripts, 8 page templates, and 11 reference documents.
Without this pattern With this pattern
──────────────────── ──────────────────
Query 1 → re-read 50 docs Query 1 → read compiled wiki (already synthesized)
Query 2 → re-read 50 docs Query 2 → read updated wiki (cross-refs already there)
Query 3 → re-read 50 docs Query 3 → read updated wiki (contradictions already flagged)
Requirements
- Claude Code or any agentskills.io-compatible agent
- Python 3.9+ (stdlib only, for the 5 included scripts — no pip install needed)
Installation
Option 1 — git clone (recommended)
git clone https://github.com/sametbrr/llm-wiki-manager ~/.claude/skills/llm-wiki-manager
Option 2 — GitHub CLI (requires gh CLI v2.90+)
gh skill install sametbrr/llm-wiki-manager
Option 3 — .skill file
curl -L -o llm-wiki-manager.skill \
https://github.com/sametbrr/llm-wiki-manager/releases/latest/download/llm-wiki-manager.skill
unzip llm-wiki-manager.skill -d ~/.claude/skills/llm-wiki-manager
After installing, start a new Claude Code session. The skill loads automatically when relevant.
Usage
The skill auto-detects which mode applies from natural language. No slash commands needed.
Modes
| Mode | Trigger examples | What happens |
|---|---|---|
| Bootstrap | "Set up a wiki", "start a knowledge base here" | Scaffolds raw/, wiki/, CLAUDE.md from templates |
| Ingest | "Add this PDF to the wiki", "I just read X, file it" | Reads source → writes summary → updates entity/concept pages → indexes → logs |
| Query | "What does the wiki say about X?", "Compare X and Y" | Reads index → candidate pages → synthesizes answer with citations → offers to file back |
| Update | "Smith 2024 supersedes Keys 1980, update the wiki" | Semantic sweep across all pages → diff-before-write per page → single log entry |
| Lint | "Health check the wiki", "anything broken?" | Runs lint_wiki.py → auto-saves wiki/reports/lint-YYYY-MM-DD.md → auto-tracks in index and log |
| Schema-evolve | "We should always do X going forward" | Updates CLAUDE.md so future sessions inherit the convention |
| Multi-wiki | "Add this to my global wiki", "promote this page to global" | Routes between project wiki and global wiki using the External Wiki: declaration in project CLAUDE.md |
| Teach | "How does this pattern work?", "explain the LLM wiki idea" | Explains the pattern, compares with RAG, walks through a concrete example |
Full walkthrough
# 1. Go to your research folder
mkdir ~/research/my-topic && cd ~/research/my-topic && claude
# 2. Bootstrap the wiki
> "Set up an LLM wiki here. Topic: history of nutrition science."
# 3. Drop a source
cp ~/Downloads/pollan-2008.pdf raw/
# 4. Ingest it
> "Ingest Pollan's In Defense of Food"
# 5. Ask questions
> "What does the wiki say about nutritionism?"
# 6. Health check (auto-saves dated report to wiki/reports/)
> "Lint the wiki"
The three-layer model
your-wiki/
├── CLAUDE.md # Schema — conventions for this wiki (co-evolved over time)
├── raw/ # YOUR layer — immutable sources you curate. LLM reads, never writes.
└── wiki/ # LLM layer — all pages written and maintained by the LLM
├── index.md # Content catalog (updated on every ingest)
├── log.md # Append-only operation log (greppable)
├── hot.md # Hot cache — most recently ingested sources and active references
├── sources/ # One summary page per ingested source
├── entities/ # People, organizations, places, products
├── concepts/ # Ideas, theories, frameworks, terms
├── notes/ # Filed-back query answers and loose pages
└── reports/ # Auto-generated dated lint reports (wiki/reports/lint-YYYY-MM-DD.md)
Division of labor:
| You do | The LLM does |
|---|---|
| Curate sources (decide what to read) | Read sources end-to-end |
| Ask questions, steer direction | Write summaries, entity and concept pages |
| Review the wiki, follow links | Update cross-references in-place |
| Decide what matters | Maintain index.md and log.md |
Own raw/ | Flag contradictions, surface gaps |
You almost never write wiki pages by hand. The LLM does the bookkeeping — that's what makes the wiki compound instead of collapse.
Core disciplines
- LLM owns
wiki/. You ownraw/. No exceptions. - Every operation logs to
log.mdviaappend_log.py. Greppable:grep "^## \[" log.md | tail -20 - Every new or updated page touches
index.mdviaupdate_index.py. Stale index = wiki that feels lost. - Cross-reference aggressively. When a source mentions an entity that already has a page, update that page. Don't leave connections implicit.
- Cite back to
raw/. Every claim is traceable to a specific source file. - Flag contradictions, don't overwrite. New source disagrees with old claim? Both stay, marked with their source, with a
> [!warning] Sources disagreecallout. - Schema lives in
CLAUDE.md. When a convention works, write it down. The next session starts informed.
What's inside
Scripts (Python stdlib, no dependencies, all idempotent)
| Script | Purpose |
|---|---|
scripts/init_wiki.py | Scaffold a new wiki — creates raw/, wiki/, CLAUDE.md, index.md, log.md, and hot.md. Idempotent. |
scripts/append_log.py | Append a ## [YYYY-MM-DD] action | title entry to log.md. Supports flexible log path detection. |
scripts/update_index.py | Add or update an entry under a category in index.md. Upserts by (category, title). Flexible index path detection. |
scripts/lint_wiki.py | Health check. Detects orphan pages and index drift in both standard markdown and Obsidian wiki-link ([[...]]) format. Default: writes wiki/reports/lint-<today>.md and auto-tracks. Run --stdout for terminal output. |
scripts/migrate_wiki.py | Schema upgrade (v1 → v2). Deduplicates index.md, moves dated changelog blocks from hot.md into log.md, stamps the schema version. Idempotent. |
Templates
| Template | Used for |
|---|---|
wiki-CLAUDE.md.tmpl | The schema file dropped into a fresh wiki |
source-summary.md.tmpl | One ingested source — claims, methodology, cross-links, open questions |
entity-page.md.tmpl | People |
// HOW IT'S BUILT
KEY FILES